Lead Laboratory
Publication Date
Prediction of non-intuitive metabolic targets with bayesian metabolic control analysis to improve 3-hydroxypropionic acid production in Aspergillus niger
Dai, Z., Zucker, J., Han, Y., et al. (2026). Front. Bioeng. Biotechnol..
Building an expanded bio-based economy through synthetic biology
Garza Elizondo, A.M., Del Valle Kesra, I., Teixeira Prates, E., et al. (2025). Biotechnology Advances.
Thermophilic Chassis-Enabled High-Throughput Selection of a Thermostable Fluorogenic Reporter
Shin, S., Triola, E.H., Granja-Travez, R.S., et al. (2025). ACS Synthetic Biology.
Metabolic engineering and synthetic biology for the environment: from perspectives of biodetection, bioremediation, and biomanufacturing
Jiang, T., Montgomery, V.A., Jetty, K., et al. (2025). Biotechnology for the Environment.
Production of triacetic acid lactone from oleic acid by engineering the yeast Candida viswanathii
Ghosh, S., Hutagalung, A., Gao, Y., et al. (2025). Microbial Cell Factories.
Staying productive under pressure: systems evaluations of β-carotene production in Yarrowia lipolytica under continuous fermentation
Worland, A.M., Xu, V.A., Duran, M.F., et al. (2025). Trends in Biotechnology.
Semi-automated biofoundry workflows for sequence coevolution-guided isoprene synthase engineering
Emelianov, G., Song, D.U., Kamath, A., et al. (2025). Trends in Biotechnology.
Machine Learning-Guided Identification of PET Hydrolases from Natural Diversity
Norton-Baker, B., Komp, E., Gado, J.E., et al. (2025). ACS Catalysis.
FluxRETAP: A REaction TArget Prioritization Genome-Scale Modeling Technique for Selecting Genetic Targets
Czajka, J., Kim, J., Tang, Y., et al. (2025). Bioinformatics.
Strong Translation Elongation Factor 1-Alpha (tef1α) Promoter Reporter Systems for Aspergillus niger
Yuan, G., Serrano-Zayas, T., Dai, Z., et al. (2025). ACS Synthetic Biology.
Integration of metabolic and bioprocess engineering for the production of β-ketoadipic acid from glucose and xylose by Pseudomonas putida
Rubinstein, G., Mokwatlo, S., Chirban, L., et al. (2025). Green Chemistry.
Discovering methylated DNA motifs in bacterial nanopore sequencing data with MIJAMP
Tidwell, A. K., Faust, E., Eckert, C., et al. (2025). Journal of Industrial Microbiology and Biotechnology.
The Future of a Myriad of Accelerated Biodiscoveries Lies in AI-Powered Mass Spectrometry and Multiomics Integration
Bilbao, A. (2025). Journal of Mass Spectrometry.
Abstraction hierarchy to define biofoundry workflows and operations for interoperable synthetic biology research and applications
Kim, H., Hillson, N., Cho, B.K., et al. (2025). Nature Communications.
From bench to biofactory: high-throughput technologies and automated workflows to accelerate biomanufacturing
Petzold, C., Mukhopadhyay, A. (2025). Current Opinion in Biotechnology.
Enabling malic acid production from corn-stover hydrolysate in Lipomyces starkeyi via metabolic engineering and bioprocess optimization
Czajka, J., Dai, Z., Radivojevic, T., et al. (2025). Microbial Cell Factories.
Process innovations to enable viable enzymatic poly(ethylene terephthalate) recycling
Murphy, N.P., Dempsey, S.H., DesVeaux, J.S., et al. (2025). Nature Chemical Engineering.
Machine learning prediction of enzyme optimum pH
Gado, J., Knotts, M., Shaw, A., et al. (2025). Nature Machine Intelligence.
Open-Source and FAIR Research Software for Proteomics
Perez-Riverol, Y., Bittremieux, W., Noble, W.S., et al. (2025). Journal of Proteome Research.
Machine learning-led semi-automated medium optimization reveals salt as key for flaviolin production in Pseudomonas putida
Zournas, A., Incha, M., Radivojevic, T., et al. (2025). Communications Biology.