Pathway Development and Evaluation

Develop metabolic engineering strategies for optimized production of target molecules 

Our pathway development and evaluation capabilities involve designing metabolic engineering and bioprocessing strategies for the production of exemplar target molecules associated with high flux metabolic intermediates called beachheads, which microbial metabolism can convert into several possible targets. 

By focusing on exemplar targets, we can rapidly develop strategies for the production of related bioproducts. Rather than starting from scratch, our collaborators can leverage existing strategies, processes, and techno-economic and life cycle assessments developed for an exemplar target associated with the same beachhead.

This map represents a compilation of metabolic pathways that have been described for conversion of biomass-derived carbohydrates to industrial chemicals. Potential beachheads are highlighted in gray, beachheads we have worked on are in green, and Agile BioFoundry target molecules are in blue. Adapted by permission from Springer Nature Customer Service Centre GmbH: Nature, Nature Catalysis, A comprehensive metabolic map for production of bio-based chemicals, Lee, S.Y., et al., © 2019. 
View a full-size PDF of the metabolic map.
The Agile BioFoundry’s Christopher Johnson and Paul Adamczyk discuss the Agile BioFoundry’s work on demonstrated bioproduct improvements and how this can be applied to industry partnerships.

USE CASE

A comparison of the minimum selling prices of adipic acid (AA) and muconic acid (MA) from previous publications and those determined in a 2024 Agile BioFoundry study.

The Agile BioFoundry has made significant progress in developing strains for high yield production of muconic acid.

We have lowered the minimum selling price for adipic acid derived from catalytic hydrogenation of muconic acid to as low as $2.60 per kg, approaching cost parity.

Our process reduces greenhouse gas emissions by up to 80% compared with fossil-derived adipic acid.

Publications