Lead Laboratory
Publication Date
Bioprocess development and scale-up for cis,cis-muconic acid production from glucose and xylose by Pseudomonas putida
Mokwatlo, S. C., Klein, B. C., Benavides, P. T., et al (2024). Green Chemistry.
Guide RNA structure design enables combinatorial CRISPRa programs for biosynthetic profiling
Fontana, J., Sparkman-Yager, D., Faulkner, I., et al (2024). Nature Communications.
PeakQC: A Software Tool for Omics-Agnostic Automated Quality Control of Mass Spectrometry Data
Harrison, A., Eder, J., Lalli, P., et al (2024). J. Am. Soc. Mass Spectrom.
Bioinformatic Prediction and High Throughput In Vivo Screening to Identify Cis-Regulatory Elements for the Development of Algal Synthetic Promoters
Torres-Tiji, Y., Sethuram, H., Gupta, A., et al (2024). ACS Synth. Biol..
Biosensors for the detection of chorismate and cis, cis-muconic acid in Corynebacterium glutamicum
Velasquez-Guzman, J., Huttanus, H., Morales. D., et al (2024). Journal of Industrial Microbiology and Biotechnology.
Enabling high-throughput enzyme discovery and engineering with a low-cost, robot-assisted pipeline
Norton-Baker, B., Denton, M.C.R., Murphy, N., et al. (2024). Scientific Reports.
Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces
Czajka, J., Han, Y., Kim, J., et al. (2024). Frontiers in Bioengineering and Biotechnology.
Machine learning analysis of RB-TnSeq fitness data predicts functional gene modules in Pseudomonas putida KT2440
Borchert, A., Bleem, A., et al. (2024). mSystems.
Special Issue on Artificial Intelligence for Synthetic Biology
Martin, H.G., et al. (2024). ACS Synthetic Biology.
Ten simple rules for managing laboratory information
Berezin, C., Aguilera, L., Billerbeck, S., et al. (2023). PLOS Computational Biology.
Comparison of wild-type KT2440 and genome-reduced EM42 Pseudomonas putida strains for muconate production from aromatic compounds and glucose
Amendola, C., Cordell, W., Kneucker, C., et al. (2023). Metabolic Engineering.
Elastomeric vitrimers from designer polyhydroxyalkanoates with recyclability and biodegradability
Cywar, R., Ling C., Clarke, R., et al. (2023). Science Advances.
Simple and Effective Squash-PCR for Rapid Genotyping of Industrial Microalgae
Yuan, G., Gao, S., Czajka, J., et al (2023). Life.
Automated Platform for the Plasmid Construction Process
Nava, A., Fear, A., Lee, N., et al. (2023). ACS Synthetic Biology.
BayFlux: A Bayesian method to quantify metabolic Fluxes and their uncertainty at the genome scale
Backman, T., Schenk, C., Radivojevic, T., et al (2023). PLOS Computational Biology.
A Procedural Framework for Benchmarking Biofoundry Capabilities
Hillson, N. (2023). ACS Synthetic Biology.
Advances in genome-scale metabolic models of industrially important fungi
Han, Y., Rangel, A., Pomraning, K., et al. (2023). Current Opinion in Biotechnology.
Identification of a specific exporter that enables high production of aconitic acid in Aspergillus pseudoterreus
Deng, S., Kim, J., Pomraning, K., Gao, Y., et al (2023). Metabolic Engineering.
Engineering transcriptional regulation of pentose metabolism in Rhodosporidium toruloides for improved conversion of xylose to bioproducts
Coradetti, S., Adamczyk, P., Liu, D., Gao, Y.,Otoupal, P., Geiselman, G., Webb-Robertson, B., Burnet, M., Kim, Y., Burnum-Johnson, K., Magnuson, J., Gladden, J. (2023). Microbial Cell Factories.
Non-canonical D-xylose and L-arabinose metabolism via D-arabitol in the oleaginous yeast Rhodosporidium toruloides
Adamczyk, P., Coradetti, S., Gladden, J. (2023). Microbial Cell Factories.