Lead Laboratory
Publication Date
Engineering transcriptional regulation of pentose metabolism in Rhodosporidium toruloides for improved conversion of xylose to bioproducts
Coradetti, S., Adamczyk, P., Liu, D., Gao, Y.,Otoupal, P., Geiselman, G., Webb-Robertson, B., Burnet, M., Kim, Y., Burnum-Johnson, K., Magnuson, J., Gladden, J. (2023). Microbial Cell Factories.
Non-canonical D-xylose and L-arabinose metabolism via D-arabitol in the oleaginous yeast Rhodosporidium toruloides
Adamczyk, P., Coradetti, S., Gladden, J. (2023). Microbial Cell Factories.
Introduction to the Special Issue on BioFoundries and Cloud Laboratories
Densmore, D., Hillson, N., Klavins, E., Meyers, C., Peccoud, J., Stracquadanio, G. (2023). ACM Journal on Emerging Technologies in Computing Systems.
Targeted mutagenesis and high-throughput screening of diversified gene and promoter libraries for isolating gain-of-function mutations
Huttanus, H., Triola, E.K., Velasquez-Guzman, J., Shin, S., Granja-Travez, R., Singh, A., Dale, T., Jha, R. (2023). Frontiers in Bioengineering and Biotechnology.
Rapid and robust squashed spore/colony PCR of industrially important fungi
Yuan, G., Czajka, J., Dai, Z., Hu, D., Pomraning, K., Hofstad, B., Kim, J., Robles, A., Deng, S., Magnuson, J. (2023). Fungal Biology and Biotechnology.
Alkaline-SDS cell lysis of microbes with acetone protein precipitation for proteomic sample preparation in 96-well plate format
Chen, Y., Gin. J., Wang, Y., de Raad, M., Tan, S., Hillson, N., Northen, T., Adams, P., Petzold, C. (2023). PLOS ONE.
PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements
Bilbao, A., Munoz, N., Kim, J., et al (2023). Nature Communications.
Metabolic engineering to improve production of 3-hydroxypropionic acid from corn-stover hydrolysate in Aspergillus species
Dai, Z., Pomraning, K., Deng, S., Kim, J., et al (2023). Biotechnology for Biofuels and Bioproducts.
Biological research and self-driving labs in deep space supported by artificial intelligence
Sanders, L.M., Scott, R. T., Yang, J. H., Qutub, A., Martin, H. G., et al (2023). Nature Machine Intelligence.
Biomonitoring and precision health in deep space supported by artificial intelligence
Scott, R. T., Sanders, L. M., Antonsen, E. L., et al (2023). Nature Machine Intelligence.
High-throughput genetic engineering of nonmodel and undomesticated bacteria via iterative site-specific genome integration
Elmore, J., et al (2023). Science Advances .
Initiation of fatty acid biosynthesis in Pseudomonas putida KT2440
McNaught, K., et al (2023). Metabolic Engineering.
Perspectives for self-driving labs in synthetic biology
Martin, H.G., et al. (2023). Current Opinion in Biotechnology.
Evaluation of engineered low-lignin poplar for conversion into advanced bioproducts
Lin, Chien-Yuan, et al. (2022). Biotechnology for Biofuels and Bioproducts.
Advanced one-pot deconstruction and valorization of lignocellulosic biomass into triacetic acid lactone using Rhodosporidium toruloides
Otoupal, P., et. al. (2022). Microbial Cell Factories.
Tackling the Catch-22 Situation of Optimizing a Sensor and a Transporter System in a Whole-Cell Microbial Biosensor Design for an Anthropogenic Small Molecule
Shin, S., Jha, R., and Dale, T. (2022). ACS Synthetic Biology.
ClusterCAD 2.0: an updated computational platform for chimeric type I polyketide synthase and nonribosomal peptide synthetase design
Tao, X., LaFrance, S., Xing, Y., Nava, A., Garcia Martin, H., Keasling, J., Backman, T. (2022). Nucleic Acids Research.
Precise Genomic Riboregulator Control of Metabolic Flux in Microbial Systems
Pandey, N., Davison, S., Krishnamurthy, M., Trettel, D., Lo, C., Starkenburg, S., Wozniak, K., Kern, T., Reardon, S., Unkefer, C., Hennelly, S., Dale, T. (2022). ACS Synthetic Biology.
Tuning a high performing multiplexed-CRISPRi Pseudomonas putida strain to further enhance indigoidine production
Czajka, J., Banerjee, D., Eng, T., Menasalvas, J., Yan, C., Munoz, N., Poirier, B., Kim, Y., Baker, S., Tang, Y., Mukhopadhyay, A. (2022). Metabolic Engineering Communications.
Itaconic acid production is regulated by LaeA in Aspergillus pseudoterreus
Pomraning, K., Dai, Z., Munoz, N., Kim, Y., Gao, Y., Deng, S., Lemmon, T., Swita, M., Zucker, J., Kim, J., Mondo, S., Panisko, E., Burnet, M., Webb-Robertson, B., Hofstad, B., Baker, S., Burnum-Johnson, K., Magnuson, J. (2022). Metabolic Engineering Communications .