Publications

Lead Laboratory

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PeakQC: A Software Tool for Omics-Agnostic Automated Quality Control of Mass Spectrometry Data

Harrison, A., Eder, J., Lalli, P., et al (2024). J. Am. Soc. Mass Spectrom.

Biosensors for the detection of chorismate and cis, cis-muconic acid in Corynebacterium glutamicum

Velasquez-Guzman, J., Huttanus, H., Morales. D., et al (2024). Journal of Industrial Microbiology and Biotechnology.

Enabling high-throughput enzyme discovery and engineering with a low-cost, robot-assisted pipeline

Norton-Baker, B., Denton, M.C.R., Murphy, N., et al. (2024). Scientific Reports.

Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces

Czajka, J., Han, Y., Kim, J., et al. (2024). Frontiers in Bioengineering and Biotechnology.

Special Issue on Artificial Intelligence for Synthetic Biology

Martin, H.G., et al. (2024). ACS Synthetic Biology.

Ten simple rules for managing laboratory information

Berezin, C., Aguilera, L., Billerbeck, S., et al. (2023). PLOS Computational Biology.

Elastomeric vitrimers from designer polyhydroxyalkanoates with recyclability and biodegradability

Cywar, R., Ling C., Clarke, R., et al. (2023). Science Advances.

Simple and Effective Squash-PCR for Rapid Genotyping of Industrial Microalgae

Yuan, G., Gao, S., Czajka, J., et al (2023). Life.

Automated Platform for the Plasmid Construction Process

Nava, A., Fear, A., Lee, N., et al. (2023). ACS Synthetic Biology.

BayFlux: A Bayesian method to quantify metabolic Fluxes and their uncertainty at the genome scale

Backman, T., Schenk, C., Radivojevic, T., et al (2023). PLOS Computational Biology.

A Procedural Framework for Benchmarking Biofoundry Capabilities

Hillson, N. (2023). ACS Synthetic Biology.

Advances in genome-scale metabolic models of industrially important fungi

Han, Y., Rangel, A., Pomraning, K., et al. (2023). Current Opinion in Biotechnology.

Identification of a specific exporter that enables high production of aconitic acid in Aspergillus pseudoterreus

Deng, S., Kim, J., Pomraning, K., Gao, Y., et al (2023). Metabolic Engineering.

Engineering transcriptional regulation of pentose metabolism in Rhodosporidium toruloides for improved conversion of xylose to bioproducts

Coradetti, S., Adamczyk, P., Liu, D., Gao, Y.,Otoupal, P., Geiselman, G., Webb-Robertson, B., Burnet, M., Kim, Y., Burnum-Johnson, K., Magnuson, J., Gladden, J. (2023). Microbial Cell Factories.

Non-canonical D-xylose and L-arabinose metabolism via D-arabitol in the oleaginous yeast Rhodosporidium toruloides

Adamczyk, P., Coradetti, S., Gladden, J. (2023). Microbial Cell Factories.

Introduction to the Special Issue on BioFoundries and Cloud Laboratories

Densmore, D., Hillson, N., Klavins, E., Meyers, C., Peccoud, J., Stracquadanio, G. (2023). ACM Journal on Emerging Technologies in Computing Systems.

Targeted mutagenesis and high-throughput screening of diversified gene and promoter libraries for isolating gain-of-function mutations

Huttanus, H., Triola, E.K., Velasquez-Guzman, J., Shin, S., Granja-Travez, R., Singh, A., Dale, T., Jha, R. (2023). Frontiers in Bioengineering and Biotechnology.