Lead Laboratory
Publication Date
Abstraction hierarchy to define biofoundry workflows and operations for interoperable synthetic biology research and applications
Kim, H., Hillson, N., Cho, B.K., et al. (2025). Nature Communications.
From bench to biofactory: high-throughput technologies and automated workflows to accelerate biomanufacturing
Petzold, C., Mukhopadhyay, A. (2025). Current Opinion in Biotechnology.
Enabling malic acid production from corn-stover hydrolysate in Lipomyces starkeyi via metabolic engineering and bioprocess optimization
Czajka, J., Dai, Z., Radivojevic, T., et al. (2025). Microbial Cell Factories.
Machine learning prediction of enzyme optimum pH
Gado, J., Knotts, M., Shaw, A., et al. (2025). Nature Machine Intelligence.
Machine learning-led semi-automated medium optimization reveals salt as key for flaviolin production in Pseudomonas putida
Zournas, A., Incha, M., Radivojevic, T., et al. (2025). Communications Biology.
Retrobiosynthesis of unnatural lactams via reprogrammed polyketide synthase
Lee, N., Schmidt, M., Li, C., et al. (2025). Nature Catalysis.
Recent developments of oleaginous yeasts toward sustainable biomanufacturing
Adamczyk, P., Jiang, T., Jetty, K., et al. (2025). Current Opinion in Biotechnology.
The oleaginous yeast Rhodosporidium toruloides engineered for biomass hydrolysate-derived (E)-α-bisabolene production
Adamczyk, P., Hwang, H. J., Chang, T., et al. (2025). Metabolic Engineering.
Tunable and Degradable Dynamic Thermosets from Compatibilized Polyhydroxyalkanoate Blends
Ling, C., Clarke, R., Rosetto, G., et al. (2025). ACS Sustainable Chemistry & Engineering.
Scalable, biologically sourced depolymerizable polydienes with intrinsically weakened carbon–carbon bonds
Hu, Q., Luo, X., Ogunfowora, L. A., et al (2025). Nature Chemical Engineering.
The tier system: a host development framework for bioengineering
Yeager, C., Hillson, H., Wozniak, K., et al (2025). Current Opinion in Biotechnology.
Bioprocess development and scale-up for cis,cis-muconic acid production from glucose and xylose by Pseudomonas putida
Mokwatlo, S. C., Klein, B. C., Benavides, P. T., et al (2024). Green Chemistry.
Guide RNA structure design enables combinatorial CRISPRa programs for biosynthetic profiling
Fontana, J., Sparkman-Yager, D., Faulkner, I., et al (2024). Nature Communications.
PeakQC: A Software Tool for Omics-Agnostic Automated Quality Control of Mass Spectrometry Data
Harrison, A., Eder, J., Lalli, P., et al (2024). J. Am. Soc. Mass Spectrom.
Bioinformatic Prediction and High Throughput In Vivo Screening to Identify Cis-Regulatory Elements for the Development of Algal Synthetic Promoters
Torres-Tiji, Y., Sethuram, H., Gupta, A., et al (2024). ACS Synth. Biol..
Biosensors for the detection of chorismate and cis, cis-muconic acid in Corynebacterium glutamicum
Velasquez-Guzman, J., Huttanus, H., Morales. D., et al (2024). Journal of Industrial Microbiology and Biotechnology.
Enabling high-throughput enzyme discovery and engineering with a low-cost, robot-assisted pipeline
Norton-Baker, B., Denton, M.C.R., Murphy, N., et al. (2024). Scientific Reports.
Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces
Czajka, J., Han, Y., Kim, J., et al. (2024). Frontiers in Bioengineering and Biotechnology.
Machine learning analysis of RB-TnSeq fitness data predicts functional gene modules in Pseudomonas putida KT2440
Borchert, A., Bleem, A., et al. (2024). mSystems.
Special Issue on Artificial Intelligence for Synthetic Biology
Martin, H.G., et al. (2024). ACS Synthetic Biology.