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Engineering transcriptional regulation of pentose metabolism in Rhodosporidium toruloides for improved conversion of xylose to bioproducts

Coradetti, S., Adamczyk, P., Liu, D., Gao, Y.,Otoupal, P., Geiselman, G., Webb-Robertson, B., Burnet, M., Kim, Y., Burnum-Johnson, K., Magnuson, J., Gladden, J. (2023). Microbial Cell Factories.

Non-canonical D-xylose and L-arabinose metabolism via D-arabitol in the oleaginous yeast Rhodosporidium toruloides

Adamczyk, P., Coradetti, S., Gladden, J. (2023). Microbial Cell Factories.

Introduction to the Special Issue on BioFoundries and Cloud Laboratories

Densmore, D., Hillson, N., Klavins, E., Meyers, C., Peccoud, J., Stracquadanio, G. (2023). ACM Journal on Emerging Technologies in Computing Systems.

Targeted mutagenesis and high-throughput screening of diversified gene and promoter libraries for isolating gain-of-function mutations

Huttanus, H., Triola, E.K., Velasquez-Guzman, J., Shin, S., Granja-Travez, R., Singh, A., Dale, T., Jha, R. (2023). Frontiers in Bioengineering and Biotechnology.

Rapid and robust squashed spore/colony PCR of industrially important fungi

Yuan, G., Czajka, J., Dai, Z., Hu, D., Pomraning, K., Hofstad, B., Kim, J., Robles, A., Deng, S., Magnuson, J. (2023). Fungal Biology and Biotechnology.

Alkaline-SDS cell lysis of microbes with acetone protein precipitation for proteomic sample preparation in 96-well plate format

Chen, Y., Gin. J., Wang, Y., de Raad, M., Tan, S., Hillson, N., Northen, T., Adams, P., Petzold, C. (2023). PLOS ONE.

Metabolic engineering to improve production of 3-hydroxypropionic acid from corn-stover hydrolysate in Aspergillus species

Dai, Z., Pomraning, K., Deng, S., Kim, J., et al (2023). Biotechnology for Biofuels and Bioproducts.

Biological research and self-driving labs in deep space supported by artificial intelligence

Sanders, L.M., Scott, R. T., Yang, J. H., Qutub, A., Martin, H. G., et al (2023). Nature Machine Intelligence.

Biomonitoring and precision health in deep space supported by artificial intelligence

Scott, R. T., Sanders, L. M., Antonsen, E. L., et al (2023). Nature Machine Intelligence.

Initiation of fatty acid biosynthesis in Pseudomonas putida KT2440

McNaught, K., et al (2023). Metabolic Engineering.

Perspectives for self-driving labs in synthetic biology

Martin, H.G., et al. (2023). Current Opinion in Biotechnology.

Evaluation of engineered low-lignin poplar for conversion into advanced bioproducts

Lin, Chien-Yuan, et al. (2022). Biotechnology for Biofuels and Bioproducts.

ClusterCAD 2.0: an updated computational platform for chimeric type I polyketide synthase and nonribosomal peptide synthetase design

Tao, X., LaFrance, S., Xing, Y., Nava, A., Garcia Martin, H., Keasling, J., Backman, T. (2022). Nucleic Acids Research.

Precise Genomic Riboregulator Control of Metabolic Flux in Microbial Systems

Pandey, N., Davison, S., Krishnamurthy, M., Trettel, D., Lo, C., Starkenburg, S., Wozniak, K., Kern, T., Reardon, S., Unkefer, C., Hennelly, S., Dale, T. (2022). ACS Synthetic Biology.

Tuning a high performing multiplexed-CRISPRi Pseudomonas putida strain to further enhance indigoidine production

Czajka, J., Banerjee, D., Eng, T., Menasalvas, J., Yan, C., Munoz, N., Poirier, B., Kim, Y., Baker, S., Tang, Y., Mukhopadhyay, A. (2022). Metabolic Engineering Communications.

Itaconic acid production is regulated by LaeA in Aspergillus pseudoterreus

Pomraning, K., Dai, Z., Munoz, N., Kim, Y., Gao, Y., Deng, S., Lemmon, T., Swita, M., Zucker, J., Kim, J., Mondo, S., Panisko, E., Burnet, M., Webb-Robertson, B., Hofstad, B., Baker, S., Burnum-Johnson, K., Magnuson, J. (2022). Metabolic Engineering Communications .