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Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces

Czajka, J., Han, Y., Kim, J., et al. (2024). Frontiers in Bioengineering and Biotechnology.

Special Issue on Artificial Intelligence for Synthetic Biology

Martin, H.G., et al. (2024). ACS Synthetic Biology.

Ten simple rules for managing laboratory information

Berezin, C., Aguilera, L., Billerbeck, S., et al. (2023). PLOS Computational Biology.

Elastomeric vitrimers from designer polyhydroxyalkanoates with recyclability and biodegradability

Cywar, R., Ling C., Clarke, R., et al. (2023). Science Advances.

Automated Platform for the Plasmid Construction Process

Nava, A., Fear, A., Lee, N., et al. (2023). ACS Synthetic Biology.

BayFlux: A Bayesian method to quantify metabolic Fluxes and their uncertainty at the genome scale

Backman, T., Schenk, C., Radivojevic, T., et al (2023). PLOS Computational Biology.

A Procedural Framework for Benchmarking Biofoundry Capabilities

Hillson, N. (2023). ACS Synthetic Biology.

Advances in genome-scale metabolic models of industrially important fungi

Han, Y., Rangel, A., Pomraning, K., et al. (2023). Current Opinion in Biotechnology.

Identification of a specific exporter that enables high production of aconitic acid in Aspergillus pseudoterreus

Deng, S., Kim, J., Pomraning, K., Gao, Y., et al (2023). Metabolic Engineering.

Engineering transcriptional regulation of pentose metabolism in Rhodosporidium toruloides for improved conversion of xylose to bioproducts

Coradetti, S., Adamczyk, P., Liu, D., Gao, Y.,Otoupal, P., Geiselman, G., Webb-Robertson, B., Burnet, M., Kim, Y., Burnum-Johnson, K., Magnuson, J., Gladden, J. (2023). Microbial Cell Factories.

Non-canonical D-xylose and L-arabinose metabolism via D-arabitol in the oleaginous yeast Rhodosporidium toruloides

Adamczyk, P., Coradetti, S., Gladden, J. (2023). Microbial Cell Factories.

Introduction to the Special Issue on BioFoundries and Cloud Laboratories

Densmore, D., Hillson, N., Klavins, E., Meyers, C., Peccoud, J., Stracquadanio, G. (2023). ACM Journal on Emerging Technologies in Computing Systems.

Targeted mutagenesis and high-throughput screening of diversified gene and promoter libraries for isolating gain-of-function mutations

Huttanus, H., Triola, E.K., Velasquez-Guzman, J., Shin, S., Granja-Travez, R., Singh, A., Dale, T., Jha, R. (2023). Frontiers in Bioengineering and Biotechnology.

Rapid and robust squashed spore/colony PCR of industrially important fungi

Yuan, G., Czajka, J., Dai, Z., Hu, D., Pomraning, K., Hofstad, B., Kim, J., Robles, A., Deng, S., Magnuson, J. (2023). Fungal Biology and Biotechnology.

Alkaline-SDS cell lysis of microbes with acetone protein precipitation for proteomic sample preparation in 96-well plate format

Chen, Y., Gin. J., Wang, Y., de Raad, M., Tan, S., Hillson, N., Northen, T., Adams, P., Petzold, C. (2023). PLOS ONE.

Metabolic engineering to improve production of 3-hydroxypropionic acid from corn-stover hydrolysate in Aspergillus species

Dai, Z., Pomraning, K., Deng, S., Kim, J., et al (2023). Biotechnology for Biofuels and Bioproducts.

Biological research and self-driving labs in deep space supported by artificial intelligence

Sanders, L.M., Scott, R. T., Yang, J. H., Qutub, A., Martin, H. G., et al (2023). Nature Machine Intelligence.