The tier system: a host development framework for bioengineering

Laboratories: Argonne National Laboratory, Lawrence Berkeley National Laboratory, Los Alamos National Laboratory, National Renewable Energy Laboratory, Oak Ridge National Laboratory, Pacific Northwest National Laboratory

Biosensors for the detection of chorismate and cis, cis-muconic acid in Corynebacterium glutamicum

Laboratories: Los Alamos National Laboratory, Oak Ridge National Laboratory

Machine learning analysis of RB-TnSeq fitness data predicts functional gene modules in Pseudomonas putida KT2440

Laboratories: National Renewable Energy Laboratory, Oak Ridge National Laboratory

PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements

Laboratories: Argonne National Laboratory, Lawrence Berkeley National Laboratory, Oak Ridge National Laboratory, Pacific Northwest National Laboratory, Sandia National Laboratories

High-throughput genetic engineering of nonmodel and undomesticated bacteria via iterative site-specific genome integration

Laboratories: Oak Ridge National Laboratory

Muconic acid production from glucose and xylose in Pseudomonas putida via evolution and metabolic engineering

Laboratories: National Renewable Energy Laboratory, Oak Ridge National Laboratory, Pacific Northwest National Laboratory

Machine-learning from Pseudomonas putida KT2440 transcriptomes reveals its transcriptional regulatory network

Laboratories: Argonne National Laboratory, Lawrence Berkeley National Laboratory, National Renewable Energy Laboratory, Oak Ridge National Laboratory

Approaches to genetic tool development for rapid domestication of non-model microorganisms

Laboratories: Oak Ridge National Laboratory

High-Throughput Large-Scale Targeted Proteomics Assays for Quantifying Pathway Proteins in Pseudomonas putida KT2440

Laboratories: National Renewable Energy Laboratory, Oak Ridge National Laboratory, Pacific Northwest National Laboratory, Sandia National Laboratories

Engineered Pseudomonas putida simultaneously catabolizes five major components of corn stover lignocellulose: Glucose, xylose, arabinose, p-coumaric acid, and acetic acid

Laboratories: Oak Ridge National Laboratory